| Protein ZmTHX3 | |
|---|---|
|
ZmTHX3 is a protein in the Trihelix family.
|
|
| Information | |
| TF Name: | ZmTHX3 |
| Species: | Maize |
| TF Family: | Trihelix |
| Gene Name(Synonym): | THX10 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 2 |
Protein ZmTHX3
ZmTHX3 is a protein in the Trihelix family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d026245 | DAPseq |  |
sequence | fimo | position |
| Zm00001d026245 | DAPseq |  |
sequence | fimo | position |
| Zm00001d026245 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d026245 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmTHX3 is the regulator
Interactions where ZmTHX3 is the target
Expand
Zm00001d026245_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MMEAGGAGAGGRDERVPQWGVQETRELIVARREMEREAVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLGKETS
DPENGRQCPFFDELHAVFTDRARDMQRQLLESESGASVKRKLKQPGGDRSSGLSDDEGNGGEESDEEKPLPSRKRKADDK
KQQHQRMSGKSRAGFSSIHELLQDFLVQQQHIDVWWREMMERRAQERIVFEQQWRQTMQKLEQERLLLEHSWMEREEQRR
MREETRAEKRDALLTALLNKLLQEDL
MMEAGGAGAGGRDERVPQWGVQETRELIVARREMEREAVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLGKETS
DPENGRQCPFFDELHAVFTDRARDMQRQLLESESGASVKRKLKQPGGDRSSGLSDDEGNGGEESDEEKPLPSRKRKADDK
KQQHQRMSGKSRAGFSSIHELLQDFLVQQQHIDVWWREMMERRAQERIVFEQQWRQTMQKLEQERLLLEHSWMEREEQRR
MREETRAEKRDALLTALLNKLLQEDL
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
Nucleotide Sequence
Copy to clipboard
Expand
ATGATGGAGGCCGGCGGCGCGGGAG...
ATGATGGAGGCCGGCGGCGCGGGAGCGGGGGGAAGGGACGAGAGGGTGCCGCAGTGGGGCGTGCAGGAGACACGGGAGCTGATCGTGGCGCGCAGGGAGATGGAGCGGGAGGCCGTCGCGGCGCGCCGCAGCGCCAAGACGATGTGGGAGGCCGTCGCGGCGCGGCTCCGGGAGCGAGGCTACCGACGAACCGCCGAGCAGTGCAAGTGCAAGTGGAAGAACCTCGGGAAAGAAACTTCTGATCCAGAAAATGGTAGGCAGTGTCCCTTCTTTGATGAGCTGCATGCCGTCTTCACAGACCGTGCAAGAGATATGCAACGACAACTCCTTGAGTCTGAATCTGGGGCTTCTGTCAAAAGGAAACTGAAGCAACCTGGTGGTGACCGGTCATCTGGGCTGTCTGATGACGAGGGCAATGGTGGTGAAGAAAGTGATGAGGAGAAACCGTTGCCCAGCAGGAAGAGGAAAGCTGACGACAAGAAACAGCAACATCAAAGAATGTCTGGGAAATCAAGAGCAGGATTTTCAAGCATACATGAACTGCTGCAGGATTTCCTTGTGCAACAACAGCACATTGATGTCTGGTGGCGGGAGATGATGGAGAGACGCGCCCAGGAGCGGATTGTTTTTGAACAGCAATGGCGGCAGACAATGCAGAAGCTGGAGCAGGAGAGGTTGCTGTTGGAACACTCGTGGATGGAACGGGAGGAGCAAAGAAGGATGAGAGAAGAAACACGGGCAGAGAAAAGGGATGCACTCCTGACTGCTCTGTTGAACAAACTCCTACAGGAAGATCTATAG
GRMZM2G415229_T01 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MMEAGGAGAGGRDERVPQWGVQETRELIVARREMEREAVAARRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNRYK
GKETSDPENGRQCPFFDELHAVFTDRARDMQRQLLESESGASVKRKLKQPGGDRSSGLSDDEGNGGEESDEEKPLPSRKR
KADDKKQQHQRMSGKSRAGFSSIHELLQDFLVQQQHIDVWWREMMERRAQERIVFEQQWRQTMQKLEQERLLLEHSWMER
EEQRRMREETRAEKRDALLTALLNKLLQEDL
Nucleotide Sequence
Copy to clipboard
Expand
AGCTAGTGTGAATGCGGCAGGCCCC...
AGCTAGTGTGAATGCGGCAGGCCCCGTTCTCTGAGACCGAGCTGTGTGAATGGGCAGAAAAGTAATGGCAGGCAGAGGCAGGCAGAGGCGAGAAGCAAGAAGAAAAACGAGGGGAGCAAGGAAATCGAGGCAAGAAAGCAAGGGCAGAGGCGCAGAGCCTGCAATCTGCTGTCCCCCGTCGCCGCCGCTGCCTCGCCGTTGCAATCGAGGCAAGAAAGTTAGGGAGTGCTGGCGTTGGGCAAGTCGCTCTGGGCCTCTGGGGAGACGGGGGCTGGAGGGGCGGCGAGATGATGGAGGCCGGCGGCGCGGGAGCGGGGGGAAGGGACGAGAGGGTGCCGCAGTGGGGCGTGCAGGAGACACGGGAGCTGATCGTGGCGCGCAGGGAGATGGAGCGGGAGGCCGTCGCGGCGCGCCGCAGCGCCAAGACGATGTGGGAGGCCGTCGCGGCGCGGCTCCGGGAGCGAGGCTACCGACGAACCGCCGAGCAGTGCAAGTGCAAGTGGAAGAACCTCGTCAACCGCTACAAGGGGAAAGAAACTTCTGATCCAGAAAATGGTAGGCAGTGTCCCTTCTTTGATGAGCTGCATGCCGTCTTCACAGACCGTGCAAGAGATATGCAACGACAACTCCTTGAGTCTGAATCTGGGGCTTCTGTCAAAAGGAAACTGAAGCAACCTGGTGGTGACCGGTCATCTGGGCTGTCTGATGACGAGGGCAATGGTGGTGAAGAAAGTGATGAGGAGAAACCGTTGCCCAGCAGGAAGAGGAAAGCTGACGACAAGAAACAGCAACATCAAAGAATGTCTGGGAAATCAAGAGCAGGATTTTCAAGCATACATGAACTGCTGCAGGATTTCCTTGTGCAACAACAGCACATTGATGTCTGGTGGCGGGAGATGATGGAGAGACGCGCCCAGGAGCGGATTGTTTTTGAACAGCAATGGCGGCAGACAATGCAGAAGCTGGAGCAGGAGAGGTTGCTGTTGGAACACTCGTGGATGGAACGGGAGGAGCAAAGAAGGATGAGAGAAGAAACACGGGCAGAGAAAAGGGATGCACTCCTGACTGCTCTGTTGAACAAACTCCTACAGGAAGATCTATAGCCGGATAAGCTTGCTCTTCATTTCGTCAGGGTATAGTTGCAGTAGTGGACATTGTTTTGTCACCTTGTTTTAGCAATTCTTTGTAGCTGCTACATATATTAACATGTGTTTGTTCAAAGAAAATTGTTTCTTATAGCATTTGTATTAGGTTCCTAGGCATTCTTTTCCAGTTATTTGGTGGAGTAAAAGTTAATTTTATGTTTAATTGTGGTTGTAAGTATCATACTGTCAGGTAAGTATACAGATCAATGCTAATACGCTTTAGC
Copyright © 2023 Grassius.org | Last updated: 2023-06-26